International
Tables for
Crystallography
Volume F
Crystallography of biological macromolecules
Edited by E. Arnold, D. M. Himmel and M. G. Rossmann

International Tables for Crystallography (2012). Vol. F, ch. 18.6, pp. 516-517   | 1 | 2 |

Section 18.6.8. HTML interface

A. T. Brunger,a* P. D. Adams,b W. L. DeLano,c P. Gros,d R. W. Grosse-Kunstleve,b J.-S. Jiang,e N. S. Pannu,f R. J. Read,g L. M. Riceh and T. Simonsoni

aHoward Hughes Medical Institute, and Departments of Molecular and Cellular Physiology, Neurology and Neurological Sciences, and Stanford Synchrotron Radiation Laboratory (SSRL), Stanford University, 1201 Welch Road, MSLS P210, Stanford, CA 94305, USA,bThe Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA,cGraduate Group in Biophysics, Box 0448, University of California, San Francisco, CA 94143, USA,dCrystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands,eProtein Data Bank, Biology Department, Brookhaven National Laboratory, Upton, NY 11973–5000, USA,fDepartment of Mathematical Sciences, University of Alberta, Edmonton, Alberta, Canada T6G 2G1,gDepartment of Haematology, University of Cambridge, Wellcome Trust Centre for Molecular Mechanisms in Disease, CIMR, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 2XY, England,hDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA, and iLaboratoire de Biologie Structurale (CNRS), IGBMC, 1 rue Laurent Fries, 67404 Illkirch (CU de Strasbourg), France
Correspondence e-mail:  brunger@stanford.edu

18.6.8. HTML interface

| top | pdf |

The HTML graphical interface uses HTML to create a high-level menu-driven environment for CNS (Fig. 18.6.8.1[link]). Compact and relatively simple Common Gateway Interface (CGI) conversion scripts are available that transform a task file into a form page and the edited form page back into a task file (Fig. 18.6.8.2[link]). These conversion scripts are written in PERL.

[Figure 18.6.8.1]

Figure 18.6.8.1 | top | pdf |

Example of a CNS HTML form page. This particular example corresponds to the task file in Fig. 18.6.7.2[link].

[Figure 18.6.8.2]

Figure 18.6.8.2 | top | pdf |

Use of the CNS HTML form page interface, emphasizing the correspondence between input fields in the form page and parameters in the task file.

A comprehensive collection of task files are available for crystallographic phasing and refinement (Fig. 18.6.7.1)[link]. New task files can be created or existing ones modified in order to address problems that are not currently met by the distributed collection of task files. The HTML graphical interface thus provides a common interface for distributed and `personal' CNS task files (Fig. 18.6.8.2[link]).








































to end of page
to top of page