International Tables for Crystallography (2012). Vol. F, ch. 22.1, pp. 703-712   | 1 | 2 |

Chapter 22.1. Protein geometry: volumes, areas and distances

Chapter index

Atomic radii 22.1.4
van der Waals
Cambridge Structural Database (CSD)
van der Waals radii
Contact surface
Convex hull
Delaunay triangulation
Molecular packing
measurement of 22.1.5
Molecular surface
Molecular volumes 22.1.1, 22.1.2
Delaunay triangulation
Voronoi construction,
Packing coefficient
Packing density
Packing efficiency
Probe radius,
Probe sphere
Re-entrant surface
Solvent-accessible surface
Standard atomic radii
Standard atomic volumes
Standard residue volumes
Surface areas 22.1.1
contact surface
convex hull
definitions of 22.1.3
molecular surface
probe sphere
re-entrant surface
solvent-accessible surface
van der Waals surface
Voronoi polyhedra
Unified-atom approach
van der Waals radii
from the CSD
van der Waals surface
Vertex error
Voronoi construction
Voronoi polyhedra
and surfaces
chopping-down method
for proteins
method B
radical-plane method
ratio method
vertex error