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Results for DC.creator="F." AND DC.creator="M." AND DC.creator="Richards" in section 22.1.3 of volume F |
Definitions of protein surface
International Tables for Crystallography (2012). Vol. F, Section 22.1.3, pp. 706-708 [ doi:10.1107/97809553602060000885 ]
... molecular simulation (Finney et al., 1980; Gerstein et al., 1995; Richards, 1974). 22.1.3.2. Definitions of surface in terms of Voronoi ... surface and the molecular surface. (This figure is adapted from Richards, 1977). (b) Voronoi polyhedra and Delaunay triangulation can also ... often called the probe sphere, that `rolls' around the surface (Richards, 1977) (Fig. 22.1.3.2). The surface of the probe ...
Molecular surface as the sum of the contact and re-entrant surfaces (MS = CS + RS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.3, pp. 707-708 [ doi:10.1107/97809553602060000885 ]
... CS + RS. References International Tables for Crystallography (2012). Vol. F, ch. 22.1, pp. 707-708 © International Union of Crystallography 2012 ...
Solvent-accessible surface (SAS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.2, p. 707 [ doi:10.1107/97809553602060000885 ]
... closed, with defined areas assignable to each individual atom (Lee & Richards, 1971). However, the individual calculated values vary in a ... as the size of the probe increases. References Lee, B. & Richards, F. M. (1971). The interpretation of protein structures: estimation ...
van der Waals surface (VDWS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.1, p. 707 [ doi:10.1107/97809553602060000885 ]
... probe radii. References International Tables for Crystallography (2012). Vol. F, ch. 22.1, p. 707 © International Union of Crystallography 2012 | home ...
Definitions of surface in terms of a probe sphere
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3, pp. 707-708 [ doi:10.1107/97809553602060000885 ]
... often called the probe sphere, that `rolls' around the surface (Richards, 1977) (Fig. 22.1.3.2). The surface of the probe is ... closed, with defined areas assignable to each individual atom (Lee & Richards, 1971). However, the individual calculated values vary in a ... et al., 1988; Pattabiraman et al., 1995). References Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the ...
Definitions of surface in terms of Voronoi polyhedra (the convex hull)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.2, p. 706 [ doi:10.1107/97809553602060000885 ]
... surface and the molecular surface. (This figure is adapted from Richards, 1977). (b) Voronoi polyhedra and Delaunay triangulation can also ... deep grooves and clefts (see Fig. 22.1.3.2). References Connolly, M. L. (1991). Molecular interstitial skeleton. Comput. Chem. 15, 37-45. Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the ...
The problem of the protein surface
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.1, p. 706 [ doi:10.1107/97809553602060000885 ]
... molecular simulation (Finney et al., 1980; Gerstein et al., 1995; Richards, 1974). References Finney, J. L., Gellatly, B. J., Golton ... dynamics of globular proteins. Biophys. J. 32, 17-33. Gerstein, M. & Chothia, C. (1996). Packing at the protein-water interface. Proc. Natl Acad. Sci. USA, 93, 10167-10172. Gerstein, M., Tsai, J. & Levitt, M. (1995). The volume of ...
Further points
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.4, p. 708 [ doi:10.1107/97809553602060000885 ]
... et al., 1988; Pattabiraman et al., 1995). References Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the natural boundary for a protein ... J. Mol. Biol. 230, 641-650. Kuhn, L. A., Siani, M. A., Pique, M. E., Fisher, C. L., Getzoff, E. ...
International Tables for Crystallography (2012). Vol. F, Section 22.1.3, pp. 706-708 [ doi:10.1107/97809553602060000885 ]
... molecular simulation (Finney et al., 1980; Gerstein et al., 1995; Richards, 1974). 22.1.3.2. Definitions of surface in terms of Voronoi ... surface and the molecular surface. (This figure is adapted from Richards, 1977). (b) Voronoi polyhedra and Delaunay triangulation can also ... often called the probe sphere, that `rolls' around the surface (Richards, 1977) (Fig. 22.1.3.2). The surface of the probe ...
Molecular surface as the sum of the contact and re-entrant surfaces (MS = CS + RS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.3, pp. 707-708 [ doi:10.1107/97809553602060000885 ]
... CS + RS. References International Tables for Crystallography (2012). Vol. F, ch. 22.1, pp. 707-708 © International Union of Crystallography 2012 ...
Solvent-accessible surface (SAS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.2, p. 707 [ doi:10.1107/97809553602060000885 ]
... closed, with defined areas assignable to each individual atom (Lee & Richards, 1971). However, the individual calculated values vary in a ... as the size of the probe increases. References Lee, B. & Richards, F. M. (1971). The interpretation of protein structures: estimation ...
van der Waals surface (VDWS)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.1, p. 707 [ doi:10.1107/97809553602060000885 ]
... probe radii. References International Tables for Crystallography (2012). Vol. F, ch. 22.1, p. 707 © International Union of Crystallography 2012 | home ...
Definitions of surface in terms of a probe sphere
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3, pp. 707-708 [ doi:10.1107/97809553602060000885 ]
... often called the probe sphere, that `rolls' around the surface (Richards, 1977) (Fig. 22.1.3.2). The surface of the probe is ... closed, with defined areas assignable to each individual atom (Lee & Richards, 1971). However, the individual calculated values vary in a ... et al., 1988; Pattabiraman et al., 1995). References Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the ...
Definitions of surface in terms of Voronoi polyhedra (the convex hull)
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.2, p. 706 [ doi:10.1107/97809553602060000885 ]
... surface and the molecular surface. (This figure is adapted from Richards, 1977). (b) Voronoi polyhedra and Delaunay triangulation can also ... deep grooves and clefts (see Fig. 22.1.3.2). References Connolly, M. L. (1991). Molecular interstitial skeleton. Comput. Chem. 15, 37-45. Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the ...
The problem of the protein surface
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.1, p. 706 [ doi:10.1107/97809553602060000885 ]
... molecular simulation (Finney et al., 1980; Gerstein et al., 1995; Richards, 1974). References Finney, J. L., Gellatly, B. J., Golton ... dynamics of globular proteins. Biophys. J. 32, 17-33. Gerstein, M. & Chothia, C. (1996). Packing at the protein-water interface. Proc. Natl Acad. Sci. USA, 93, 10167-10172. Gerstein, M., Tsai, J. & Levitt, M. (1995). The volume of ...
Further points
International Tables for Crystallography (2012). Vol. F, Section 22.1.3.3.4, p. 708 [ doi:10.1107/97809553602060000885 ]
... et al., 1988; Pattabiraman et al., 1995). References Gerstein, M. & Lynden-Bell, R. M. (1993c). What is the natural boundary for a protein ... J. Mol. Biol. 230, 641-650. Kuhn, L. A., Siani, M. A., Pique, M. E., Fisher, C. L., Getzoff, E. ...
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