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The DDL2 presentation
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, Section 2.6.2, p. 61 [ doi:10.1107/97809553602060000732 ]
The DDL2 presentation 2.6.2. The DDL2 presentation The syntax used in mmCIF data files and DDL2 dictionaries is a subset of the STAR syntax. Definitions in DDL2 dictionaries are encapsulated in named save frames (see Chapter 2.1 for a description of the STAR File syntax). A save frame is a ...

Introduction
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, Section 2.6.1, p. 61 [ doi:10.1107/97809553602060000732 ]
... in 1994. This approach, which later became known as DDL2 (Westbrook & Hall, 1995), employs a largely relational data model that adhered ... R. & Spadaccini, N. (1994). The STAR File: detailed specifications. J. Chem. Inf. Comput. Sci. 34, 505-508. Hall, S. R. ... File: a new format for electronic data transfer and archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Hall, S. ...

Specification of a relational dictionary definition language (DDL2)
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, ch. 2.6, pp. 61-70 [ doi:10.1107/97809553602060000732 ]
... in 1994. This approach, which later became known as DDL2 (Westbrook & Hall, 1995), employs a largely relational data model that adhered ... in the ITEM_EXAMPLES category. In Example 2.6.5.1, one value, 'J. Mol. Biol.', is specified, but multiple examples can be provided ... of revision must be specified. References Allen, F. H., Barnard, J. M., Cook, A. F. P. & Hall, S. R. (1995) ...

Data exchange and format translation
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.1, pp. 195-196 [ doi:10.1107/97809553602060000738 ]
Data exchange and format translation A3.6.2.1. Data exchange and format translation The majority of crystallographic and structural concepts embodied in the PDB are already well described in the mmCIF data dictionary. However, while there is a conceptual description of most crystallographic information in PDB-format files within the mmCIF dictionary, the ...

Extensions for structural genomics
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.2, p. 197 [ doi:10.1107/97809553602060000738 ]
Extensions for structural genomics A3.6.2.2. Extensions for structural genomics An International Task Force on Deposition, Archiving, and Curation of Primary Information for Structural Genomics was formed under the auspices of the International Structural Genomics Organization (ISGO) in 2001 (Berman, 2001) and was asked to develop specifications for data from structural genomics ...

Noncrystallographic methods
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3, p. 197 [ doi:10.1107/97809553602060000738 ]
... file: a new format for electronic data transfer and archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Henrick, K., Newman ... and validation of high-resolution electron microscopy macromolecular structural information. J. Struct. Biol. 144, 228-237. Ulrich, E. L., Markley, J. L. & Kyogoku, Y. (1989). Creation of a nuclear ...

NMR
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.1, p. 197 [ doi:10.1107/97809553602060000738 ]
... file: a new format for electronic data transfer and archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Ulrich, E. L., Markley, J. L. & Kyogoku, Y. (1989). Creation of a nuclear magnetic ...

Cryo-electron microscopy
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.2, p. 197 [ doi:10.1107/97809553602060000738 ]
... and validation of high-resolution electron microscopy macromolecular structural information. J. Struct. Biol. 144, 228-237. International Tables for Crystallography (2006 ...

Protein production
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.3, p. 197 [ doi:10.1107/97809553602060000738 ]
Protein production A3.6.2.3.3. Protein production The International Task Force on Deposition, Archiving, and Curation of Primary Information for Structural Genomics (Section A3.6.2.2) has also provided recommendations for the deposition of information about protein production. These recommendations are summarized at http://deposit.pdb.org/mmcif/sg-data/protprod.html . These data extensions have been ...

Supporting software
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.4, p. 197 [ doi:10.1107/97809553602060000738 ]
Supporting software A3.6.2.4. Supporting software The RCSB/PDB has developed a set of software tools which support the PDB exchange dictionary framework (Chapter 5.5 ). These include PDB_EXTRACT, a tool to extract data from the output files of structure determination applications; ADIT, a web-based editor for data files based ...

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